Class/Object

nl.biopet.tools.seqstat

GroupStats

Related Docs: object GroupStats | package seqstat

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case class GroupStats(r1seq: PositionalHistogram, r1qual: PositionalHistogram, r2seq: Option[PositionalHistogram], r2qual: Option[PositionalHistogram]) extends Logging with Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, Logging, AnyRef, Any
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Inherited
  1. GroupStats
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Logging
  7. AnyRef
  8. Any
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Visibility
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Instance Constructors

  1. new GroupStats(r1seq: PositionalHistogram, r1qual: PositionalHistogram, r2seq: Option[PositionalHistogram], r2qual: Option[PositionalHistogram])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def +(other: GroupStats): GroupStats

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  4. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  5. def addFastqRecords(r1: FastqRecord, r2: Option[FastqRecord] = None): Unit

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  6. def addFragment(r1Seq: String, r1Qual: String, r2Seq: Option[String] = None, r2Qual: Option[String] = None): Unit

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  7. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  10. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  13. def isPaired: Boolean

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  14. def logger: Logger

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    Definition Classes
    Logging

  15. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  16. final def notify(): Unit

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    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  18. val r1qual: PositionalHistogram

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  19. val r1seq: PositionalHistogram

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  20. val r2qual: Option[PositionalHistogram]

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  21. val r2seq: Option[PositionalHistogram]

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  22. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  23. def toSchemaData: Data

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  24. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Logging

Inherited from AnyRef

Inherited from Any

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