PositionalHistogram

Value Members

1. final def !=(arg0: Any): Boolean

   

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2. final def ##(): Int

   

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3. def +=(other: PositionalHistogram): PositionalHistogram

   

   With this method 2 PositionalHistograms can be combined

4. final def ==(arg0: Any): Boolean

   

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5. def addRead(read: String): Unit

   

   This will add a read to the histogram, this can be nucleotides of the qual string

6. final def asInstanceOf[T0]: T0

   

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7. def clone(): AnyRef

   

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   protected[java.lang]

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8. final def eq(arg0: AnyRef): Boolean

   

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9. def equals(arg0: Any): Boolean

   

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10. def finalize(): Unit

    

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    protected[java.lang]

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    @throws( classOf[java.lang.Throwable] )

11. final def getClass(): Class[_]

    

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12. def hashCode(): Int

    

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13. final def isInstanceOf[T0]: Boolean

    

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14. def lengthHistogram: Histogram[Int]

    

    This will return a a histogram of the length of all reads

15. val map: Map[Char, Histogram[Int]]

    

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16. final def ne(arg0: AnyRef): Boolean

    

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17. final def notify(): Unit

    

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18. final def notifyAll(): Unit

    

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19. final def synchronized[T0](arg0: ⇒ T0): T0

    

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20. def toJson: JsObject

    

    This returns a json object from this histogram

    This returns a json object from this histogram

    { "<value>": [<count>] }

21. def toMap: Map[String, Array[Long]]

    

22. def toString(): String

    

    Definition Classes

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23. def totalBases: Long

    

    Returns total base count

24. def totalReads: Long

    

    Returns total read count

25. def valueHistogram: Histogram[Char]

    

    This will give a single histogram for the value, this will lose the positional information

26. final def wait(): Unit

    

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27. final def wait(arg0: Long, arg1: Int): Unit

    

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28. final def wait(arg0: Long): Unit

    

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