Class

nl.biopet.tools.wipereads

Args

Related Doc: package wipereads

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case class Args(inputBam: File = new File(""), targetRegions: File = new File(""), outputBam: File = new File(""), filteredOutBam: Option[File] = None, readGroupIds: Set[String] = Set.empty[String], minMapQ: Int = 0, limitToRegion: Boolean = false, makeIndex: Boolean = false, featureType: String = "exon", bloomSize: Long = 70000000, bloomFp: Double = 4e-7) extends Product with Serializable

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Instance Constructors

  1. new Args(inputBam: File = new File(""), targetRegions: File = new File(""), outputBam: File = new File(""), filteredOutBam: Option[File] = None, readGroupIds: Set[String] = Set.empty[String], minMapQ: Int = 0, limitToRegion: Boolean = false, makeIndex: Boolean = false, featureType: String = "exon", bloomSize: Long = 70000000, bloomFp: Double = 4e-7)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. val bloomFp: Double

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  6. val bloomSize: Long

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  7. def clone(): AnyRef

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  8. final def eq(arg0: AnyRef): Boolean

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  9. val featureType: String

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  10. val filteredOutBam: Option[File]

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  11. def finalize(): Unit

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    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

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  13. val inputBam: File

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  14. final def isInstanceOf[T0]: Boolean

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  15. val limitToRegion: Boolean

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  16. val makeIndex: Boolean

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  17. val minMapQ: Int

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  18. final def ne(arg0: AnyRef): Boolean

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  19. final def notify(): Unit

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  20. final def notifyAll(): Unit

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  21. val outputBam: File

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  22. val readGroupIds: Set[String]

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  23. final def synchronized[T0](arg0: ⇒ T0): T0

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  24. val targetRegions: File

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  25. final def wait(): Unit

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    @throws( ... )

  26. final def wait(arg0: Long, arg1: Int): Unit

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  27. final def wait(arg0: Long): Unit

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Inherited from Product

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