VcfToTsv

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. def aboutText: String

   

   Definition Classes

   ToolCommand

5. def argsParser: ArgsParser

   

   Definition Classes

   VcfToTsv → ToolCommand

6. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

7. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

8. def cmdArrayToArgs(args: Array[String]): Args

   

   Definition Classes

   ToolCommand

9. def contactText: String

   

   Definition Classes

   ToolCommand

10. def contributingText: String

    

    Definition Classes

    ToolCommand

11. def createFormatter(len: Int): DecimalFormat

    

    This function creates a correct DecimalFormat for a specific length of decimals

    This function creates a correct DecimalFormat for a specific length of decimals

    len

    number of decimal places

    returns

    DecimalFormat formatter

12. val defaultFields: List[String]

    

13. def descriptionText: String

    

    Definition Classes

    VcfToTsv → ToolCommand

14. def documentationText: String

    

    Definition Classes

    ToolCommand

15. def emptyArgs: Args

    

    Definition Classes

    VcfToTsv → ToolCommand

16. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

17. def equals(arg0: Any): Boolean

    

    Definition Classes

    AnyRef → Any

18. def example(args: String*): String

    

    Definition Classes

    ToolCommand

19. def exampleText: String

    

    Definition Classes

    VcfToTsv → ToolCommand

20. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

21. def generateDocumentation(outputDirectory: File, version: String, release: Boolean): Unit

    

    Definition Classes

    ToolCommand

22. def generateReadme(outputFile: File): Unit

    

    Definition Classes

    ToolCommand

23. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

24. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

25. def installationText: String

    

    Definition Classes

    ToolCommand

26. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

27. def logger: Logger

    

    Definition Classes

    Logging

28. def main(args: Array[String]): Unit

    

    Definition Classes

    VcfToTsv → ToolCommand

29. def mainPageContents: List[(String, String)]

    

    Definition Classes

    ToolCommand

30. def manualText: String

    

    Definition Classes

    VcfToTsv → ToolCommand

31. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

32. final def notify(): Unit

    

    Definition Classes

    AnyRef

33. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

34. def readmeContents: List[(String, String)]

    

    Definition Classes

    ToolCommand

35. def sortFields(fields: Set[String], samples: List[String]): List[String]

    

    This fields sorts fields, such that non-info and non-sample specific fields (e.g.

    This fields sorts fields, such that non-info and non-sample specific fields (e.g. general ones) are on front followed by info fields followed by sample-specific fields

    fields

    fields

    samples

    samples

    returns

    sorted samples

36. def sparkExample(args: String*): String

    

    Definition Classes

    ToolCommand

37. def sparkUnsafeExample(args: String*): String

    

    Definition Classes

    ToolCommand

38. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

39. def toString(): String

    

    Definition Classes

    AnyRef → Any

40. def toolName: String

    

    Definition Classes

    ToolCommand

41. def unsafeExample(args: String*): String

    

    Definition Classes

    ToolCommand

42. def urlToolName: String

    

    Definition Classes

    ToolCommand

43. def usageText: String

    

    Definition Classes

    ToolCommand

44. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

45. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

46. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )