Class/Object

nl.biopet.tools.vcfstats

StatsTotal

Related Docs: object StatsTotal | package vcfstats

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case class StatsTotal(general: Option[GeneralStats], genotype: Option[GenotypeStats], sampleDistributions: Option[SampleDistributions], sampleCompare: Option[SampleCompare], infoFields: Map[VcfField, InfoFieldCounts], genotypeFields: Map[VcfField, GenotypeFieldCounts]) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. StatsTotal
  2. Serializable
  3. Serializable
  4. Product
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Visibility
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Instance Constructors

  1. new StatsTotal(general: Option[GeneralStats], genotype: Option[GenotypeStats], sampleDistributions: Option[SampleDistributions], sampleCompare: Option[SampleCompare], infoFields: Map[VcfField, InfoFieldCounts], genotypeFields: Map[VcfField, GenotypeFieldCounts])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def +=(other: StatsTotal): StatsTotal

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    This combines stats classes into this

  4. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  5. def addRecord(record: VariantContext, cmdArgs: Args): Unit

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    This method will add a single variantcontext to the stats object

  6. final def asInstanceOf[T0]: T0

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    Definition Classes
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  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  9. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  10. val general: Option[GeneralStats]

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  11. val genotype: Option[GenotypeStats]

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  12. val genotypeFields: Map[VcfField, GenotypeFieldCounts]

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  13. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  14. val infoFields: Map[VcfField, InfoFieldCounts]

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  15. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  16. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  17. final def notify(): Unit

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    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  19. val sampleCompare: Option[SampleCompare]

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  20. val sampleDistributions: Option[SampleDistributions]

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  22. final def wait(): Unit

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    Definition Classes
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    @throws( ... )

  23. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  24. final def wait(arg0: Long): Unit

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    Definition Classes
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    @throws( ... )

  25. def writeStats(outputDir: File): Unit

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    Writing output files to a given directory

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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