Object

nl.biopet.tools.seqstat

SeqStat

Related Doc: package seqstat

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object SeqStat extends MultiToolCommand

Linear Supertypes
MultiToolCommand, ToolCommand[Args], Logging, AnyRef, Any
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Inherited
  1. SeqStat
  2. MultiToolCommand
  3. ToolCommand
  4. Logging
  5. AnyRef
  6. Any
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Visibility
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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any
  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  4. def aboutText: String

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    Definition Classes
    ToolCommand
  5. def allTools: List[ToolCommand[_]]

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    Definition Classes
    MultiToolCommand
  6. def argsParser: ArgsParser

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    Definition Classes
    MultiToolCommand → ToolCommand
  7. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any
  8. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. def cmdArrayToArgs(args: Array[String]): Args

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    Definition Classes
    ToolCommand
  10. def contactText: String

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    Definition Classes
    ToolCommand
  11. def contributingText: String

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    Definition Classes
    ToolCommand
  12. def descriptionText: String

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    Definition Classes
    SeqStat → ToolCommand
  13. def documentationText: String

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    Definition Classes
    ToolCommand
  14. def emptyArgs: Args

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    Definition Classes
    MultiToolCommand → ToolCommand
  15. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  16. def equals(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any
  17. def example(args: String*): String

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    Definition Classes
    ToolCommand
  18. def exampleText: String

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    Definition Classes
    SeqStat → ToolCommand
  19. def extendedDescriptionText: String

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    Definition Classes
    MultiToolCommand
  20. def extendedExampleText: String

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    Definition Classes
    MultiToolCommand
  21. def extendedManualText: String

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    Definition Classes
    MultiToolCommand
  22. def extendedUsage: Boolean

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    Definition Classes
    SeqStat → MultiToolCommand
  23. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  24. def generateDocumentation(outputDirectory: File, version: String, release: Boolean): Unit

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    Definition Classes
    ToolCommand
  25. def generateReadme(outputFile: File): Unit

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    Definition Classes
    ToolCommand
  26. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any
  27. def hashCode(): Int

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    Definition Classes
    AnyRef → Any
  28. def installationText: String

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    Definition Classes
    ToolCommand
  29. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any
  30. def logger: Logger

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    Definition Classes
    Logging
  31. def main(args: Array[String]): Unit

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    Definition Classes
    MultiToolCommand → ToolCommand
  32. def mainPageContents: List[(String, String)]

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    Definition Classes
    ToolCommand
  33. def manualText: String

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    Definition Classes
    SeqStat → ToolCommand
  34. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef
  35. final def notify(): Unit

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    Definition Classes
    AnyRef
  36. final def notifyAll(): Unit

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    Definition Classes
    AnyRef
  37. def printToolList(title: String, tools: List[ToolCommand[_]]): Unit

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    Definition Classes
    MultiToolCommand
  38. def printToolList(): Unit

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    Definition Classes
    MultiToolCommand
  39. def readmeContents: List[(String, String)]

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    Definition Classes
    ToolCommand
  40. def singleTool(name: String): ToolCommand[_]

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    Definition Classes
    MultiToolCommand
  41. def sparkExample(args: String*): String

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    Definition Classes
    ToolCommand
  42. def sparkUnsafeExample(args: String*): String

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    Definition Classes
    ToolCommand
  43. def subTools: Map[String, List[ToolCommand[_]]]

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    Definition Classes
    SeqStat → MultiToolCommand
  44. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef
  45. def toString(): String

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    Definition Classes
    AnyRef → Any
  46. def toolName: String

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    Definition Classes
    ToolCommand
  47. def unsafeExample(args: String*): String

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    Definition Classes
    ToolCommand
  48. def urlToolName: String

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    Definition Classes
    ToolCommand
  49. def usageHeaders: List[String]

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    Attributes
    protected
    Definition Classes
    ToolCommand
  50. def usageHtmlTable: String

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    Definition Classes
    ToolCommand
  51. def usageRows(parser: OptionParser[Args]): List[List[String]]

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    Attributes
    protected
    Definition Classes
    ToolCommand
  52. def usageText: String

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    Definition Classes
    MultiToolCommand → ToolCommand
  53. def validateArgs(args: String*): Unit

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    Definition Classes
    MultiToolCommand → ToolCommand
  54. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  55. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  56. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from MultiToolCommand

Inherited from ToolCommand[Args]

Inherited from Logging

Inherited from AnyRef

Inherited from Any

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