nl
.
biopet
.
tools
.
seqstat
GroupStats
Related Docs:
object GroupStats
|
package seqstat
case class
GroupStats
(
r1seq:
PositionalHistogram
,
r1qual:
PositionalHistogram
,
r2seq:
Option
[
PositionalHistogram
]
,
r2qual:
Option
[
PositionalHistogram
]
)
extends
Logging
with
Product
with
Serializable
Linear Supertypes
Serializable
,
Serializable
,
Product
,
Equals
,
Logging
,
AnyRef
,
Any
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Inherited
GroupStats
Serializable
Serializable
Product
Equals
Logging
AnyRef
Any
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Public
All
Instance Constructors
new
GroupStats
(
r1seq:
PositionalHistogram
,
r1qual:
PositionalHistogram
,
r2seq:
Option
[
PositionalHistogram
]
,
r2qual:
Option
[
PositionalHistogram
]
)
Value Members
final
def
!=
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
final
def
##
()
:
Int
Definition Classes
AnyRef → Any
def
+
(
other:
GroupStats
)
:
GroupStats
final
def
==
(
arg0:
Any
)
:
Boolean
Definition Classes
AnyRef → Any
def
addFastqRecords
(
r1:
FastqRecord
,
r2:
Option
[
FastqRecord
] =
None
)
:
Unit
def
addFragment
(
r1Seq:
String
,
r1Qual:
String
,
r2Seq:
Option
[
String
] =
None
,
r2Qual:
Option
[
String
] =
None
)
:
Unit
final
def
asInstanceOf
[
T0
]
:
T0
Definition Classes
Any
def
clone
()
:
AnyRef
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
eq
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
def
finalize
()
:
Unit
Attributes
protected[
java.lang
]
Definition Classes
AnyRef
Annotations
@throws
(
classOf[java.lang.Throwable]
)
final
def
getClass
()
:
Class
[_]
Definition Classes
AnyRef → Any
final
def
isInstanceOf
[
T0
]
:
Boolean
Definition Classes
Any
def
isPaired
:
Boolean
def
logger
:
Logger
Definition Classes
Logging
final
def
ne
(
arg0:
AnyRef
)
:
Boolean
Definition Classes
AnyRef
final
def
notify
()
:
Unit
Definition Classes
AnyRef
final
def
notifyAll
()
:
Unit
Definition Classes
AnyRef
val
r1qual
:
PositionalHistogram
val
r1seq
:
PositionalHistogram
val
r2qual
:
Option
[
PositionalHistogram
]
val
r2seq
:
Option
[
PositionalHistogram
]
final
def
synchronized
[
T0
]
(
arg0: ⇒
T0
)
:
T0
Definition Classes
AnyRef
def
toSchemaData
:
Data
final
def
wait
()
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
,
arg1:
Int
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
final
def
wait
(
arg0:
Long
)
:
Unit
Definition Classes
AnyRef
Annotations
@throws
(
...
)
Inherited from
Serializable
Inherited from
Serializable
Inherited from
Product
Inherited from
Equals
Inherited from
Logging
Inherited from
AnyRef
Inherited from
Any
Ungrouped