refflatsstats

Type Members

1. case class Args(refflatFile: File = null, referenceFasta: File = null, geneOutput: File = null, transcriptOutput: File = null, exonOutput: File = null, intronOutput: File = null) extends Product with Serializable

   

2. class ArgsParser extends AbstractOptParser[Args]

   

3. case class GeneStats(name: String, contig: String, start: Int, end: Int, totalGc: Double, exonGc: Double, intronGc: Option[Double], exonLength: Int, transcripts: Array[TranscriptStats]) extends Product with Serializable

   

   Created by pjvanthof on 01/05/2017.

4. case class RegionStats(start: Int, end: Int, gc: Double) extends Product with Serializable

   

   Created by pjvanthof on 01/05/2017.

5. case class TranscriptStats(name: String, start: Int, end: Int, totalGc: Double, exonGc: Double, intronGc: Option[Double], exons: Array[RegionStats], introns: Array[RegionStats]) extends Product with Serializable

   

   Created by pjvanthof on 01/05/2017.