Class/Object

nl.biopet.tools.mergesv

Init

Related Docs: object Init | package mergesv

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case class Init(dict: SAMSequenceDictionary, readers: Map[String, List[VCFFileReader]], headers: Map[String, List[VCFHeader]], samples: Seq[String], writer: VariantContextWriter, referenceReader: IndexedFastaSequenceFile) extends Product with Serializable

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Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. Init
  2. Serializable
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Visibility
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Instance Constructors

  1. new Init(dict: SAMSequenceDictionary, readers: Map[String, List[VCFFileReader]], headers: Map[String, List[VCFHeader]], samples: Seq[String], writer: VariantContextWriter, referenceReader: IndexedFastaSequenceFile)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  4. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  5. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  6. val dict: SAMSequenceDictionary

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  7. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  8. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  9. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  10. val headers: Map[String, List[VCFHeader]]

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  11. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  12. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  13. final def notify(): Unit

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    Definition Classes
    AnyRef

  14. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  15. val readers: Map[String, List[VCFFileReader]]

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  16. val referenceReader: IndexedFastaSequenceFile

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  17. val samples: Seq[String]

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  19. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  20. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  21. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. val writer: VariantContextWriter

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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