FastqSplitter

Value Members

1. final def !=(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

2. final def ##(): Int

   

   Definition Classes

   AnyRef → Any

3. final def ==(arg0: Any): Boolean

   

   Definition Classes

   AnyRef → Any

4. def aboutText: String

   

   Definition Classes

   ToolCommand

5. def argsParser: ArgsParser

   

   Definition Classes

   FastqSplitter → ToolCommand

6. final def asInstanceOf[T0]: T0

   

   Definition Classes

   Any

7. def clone(): AnyRef

   

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

8. def cmdArrayToArgs(args: Array[String]): Args

   

   Definition Classes

   ToolCommand

9. def contactText: String

   

   Definition Classes

   ToolCommand

10. def contributingText: String

    

    Definition Classes

    ToolCommand

11. def descriptionText: String

    

    Definition Classes

    FastqSplitter → ToolCommand

12. def documentationText: String

    

    Definition Classes

    ToolCommand

13. def emptyArgs: Args

    

    Definition Classes

    FastqSplitter → ToolCommand

14. final def eq(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

15. def equals(arg0: Any): Boolean

    

    Definition Classes

    AnyRef → Any

16. def example(args: String*): String

    

    Definition Classes

    ToolCommand

17. def exampleText: String

    

    Definition Classes

    FastqSplitter → ToolCommand

18. def finalize(): Unit

    

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

19. def generateDocumentation(outputDirectory: File, version: String, release: Boolean): Unit

    

    Definition Classes

    ToolCommand

20. def generateReadme(outputFile: File): Unit

    

    Definition Classes

    ToolCommand

21. final def getClass(): Class[_]

    

    Definition Classes

    AnyRef → Any

22. def hashCode(): Int

    

    Definition Classes

    AnyRef → Any

23. def installationText: String

    

    Definition Classes

    ToolCommand

24. final def isInstanceOf[T0]: Boolean

    

    Definition Classes

    Any

25. def logger: Logger

    

    Definition Classes

    Logging

26. def main(args: Array[String]): Unit

    

    This is main entry point for the tool FastqSplitter

    This is main entry point for the tool FastqSplitter

    args

    for detail fix this look into ArgsParser

    Definition Classes

    FastqSplitter → ToolCommand

27. def mainPageContents: List[(String, String)]

    

    Definition Classes

    ToolCommand

28. def manualText: String

    

    Definition Classes

    FastqSplitter → ToolCommand

29. final def ne(arg0: AnyRef): Boolean

    

    Definition Classes

    AnyRef

30. final def notify(): Unit

    

    Definition Classes

    AnyRef

31. final def notifyAll(): Unit

    

    Definition Classes

    AnyRef

32. def readmeContents: List[(String, String)]

    

    Definition Classes

    ToolCommand

33. def sparkExample(args: String*): String

    

    Definition Classes

    ToolCommand

34. def sparkUnsafeExample(args: String*): String

    

    Definition Classes

    ToolCommand

35. def splitFastqFile(inputFile: File, outputFiles: List[File], groupSize: Int = 100, logLimit: Int = 1000000): Unit

    

    This method will split a fastq file

    This method will split a fastq file

    inputFile

    input fastq file

    outputFiles

    output fastq files

    groupSize

    Number fastq records to write to a file

    logLimit

    Per how much records a status log is outputed

36. final def synchronized[T0](arg0: ⇒ T0): T0

    

    Definition Classes

    AnyRef

37. def toString(): String

    

    Definition Classes

    AnyRef → Any

38. def toolName: String

    

    Definition Classes

    ToolCommand

39. def unsafeExample(args: String*): String

    

    Definition Classes

    ToolCommand

40. def urlToolName: String

    

    Definition Classes

    ToolCommand

41. def usageHeaders: List[String]

    

    Attributes

    protected

    Definition Classes

    ToolCommand

42. def usageHtmlTable: String

    

    Definition Classes

    ToolCommand

43. def usageRows(parser: OptionParser[Args]): List[List[String]]

    

    Attributes

    protected

    Definition Classes

    ToolCommand

44. def usageText: String

    

    Definition Classes

    ToolCommand

45. def validateArgs(args: String*): Unit

    

    Definition Classes

    ToolCommand

46. final def wait(): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

47. final def wait(arg0: Long, arg1: Int): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

48. final def wait(arg0: Long): Unit

    

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )