Class

nl.biopet.tools.extractalignedfastq

Args

Related Doc: package extractalignedfastq

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case class Args(inputBam: File = new File(""), intervals: List[String] = List.empty[String], inputFastq1: File = new File(""), inputFastq2: Option[File] = None, outputFastq1: File = new File(""), outputFastq2: Option[File] = None, minMapQ: Int = 0, commonSuffixLength: Int = 0) extends Product with Serializable

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Instance Constructors

  1. new Args(inputBam: File = new File(""), intervals: List[String] = List.empty[String], inputFastq1: File = new File(""), inputFastq2: Option[File] = None, outputFastq1: File = new File(""), outputFastq2: Option[File] = None, minMapQ: Int = 0, commonSuffixLength: Int = 0)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. def clone(): AnyRef

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  6. val commonSuffixLength: Int

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  7. final def eq(arg0: AnyRef): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. val inputBam: File

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  11. val inputFastq1: File

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  12. val inputFastq2: Option[File]

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  13. val intervals: List[String]

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  14. final def isInstanceOf[T0]: Boolean

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  15. val minMapQ: Int

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  16. final def ne(arg0: AnyRef): Boolean

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  17. final def notify(): Unit

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  18. final def notifyAll(): Unit

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  19. val outputFastq1: File

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  20. val outputFastq2: Option[File]

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  21. final def synchronized[T0](arg0: ⇒ T0): T0

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  22. final def wait(): Unit

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  23. final def wait(arg0: Long, arg1: Int): Unit

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  24. final def wait(arg0: Long): Unit

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