Class

nl.biopet.tools.digenicsearch

Args

Related Doc: package digenicsearch

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case class Args(inputFiles: List[File] = Nil, outputDir: File = null, reference: File = null, regions: Option[File] = None, aggregation: Option[File] = None, pedFiles: List[File] = Nil, externalFiles: Map[String, File] = Map(), singleExternalFilters: List[AnnotationFilter] = Nil, pairExternalFilters: List[AnnotationFilter] = Nil, detectionMode: DetectionMode.Value = DetectionMode.Varant, singleAnnotationFilter: List[AnnotationFilter] = Nil, pairAnnotationFilter: List[AnnotationFilter] = Nil, fractions: FractionsCutoffs = FractionsCutoffs(), usingOtherFamilies: Boolean = false, maxDistance: Option[Long] = None, binSize: Int = 1000000, maxContigsInSingleJob: Int = 250, sparkMaster: Option[String] = None, onlyFamily: Option[String] = None) extends Product with Serializable

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Instance Constructors

  1. new Args(inputFiles: List[File] = Nil, outputDir: File = null, reference: File = null, regions: Option[File] = None, aggregation: Option[File] = None, pedFiles: List[File] = Nil, externalFiles: Map[String, File] = Map(), singleExternalFilters: List[AnnotationFilter] = Nil, pairExternalFilters: List[AnnotationFilter] = Nil, detectionMode: DetectionMode.Value = DetectionMode.Varant, singleAnnotationFilter: List[AnnotationFilter] = Nil, pairAnnotationFilter: List[AnnotationFilter] = Nil, fractions: FractionsCutoffs = FractionsCutoffs(), usingOtherFamilies: Boolean = false, maxDistance: Option[Long] = None, binSize: Int = 1000000, maxContigsInSingleJob: Int = 250, sparkMaster: Option[String] = None, onlyFamily: Option[String] = None)

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Value Members

  1. final def !=(arg0: Any): Boolean

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    AnyRef → Any

  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. val aggregation: Option[File]

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  5. final def asInstanceOf[T0]: T0

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  6. val binSize: Int

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  7. def clone(): AnyRef

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    protected[java.lang]
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    @throws( ... )

  8. val detectionMode: DetectionMode.Value

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  9. final def eq(arg0: AnyRef): Boolean

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  10. val externalFiles: Map[String, File]

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  11. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  12. val fractions: FractionsCutoffs

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  13. final def getClass(): Class[_]

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  14. val inputFiles: List[File]

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  15. final def isInstanceOf[T0]: Boolean

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  16. val maxContigsInSingleJob: Int

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  17. val maxDistance: Option[Long]

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  18. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
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  19. final def notify(): Unit

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  20. final def notifyAll(): Unit

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  21. val onlyFamily: Option[String]

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  22. val outputDir: File

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  23. val pairAnnotationFilter: List[AnnotationFilter]

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  24. val pairExternalFilters: List[AnnotationFilter]

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  25. val pedFiles: List[File]

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  26. val reference: File

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  27. val regions: Option[File]

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  28. val singleAnnotationFilter: List[AnnotationFilter]

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  29. val singleExternalFilters: List[AnnotationFilter]

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  30. val sparkMaster: Option[String]

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  31. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
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  32. val usingOtherFamilies: Boolean

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  33. final def wait(): Unit

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  34. final def wait(arg0: Long, arg1: Int): Unit

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  35. final def wait(arg0: Long): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

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