Class

nl.biopet.tools.bastygeneratefasta

Args

Related Doc: package bastygeneratefasta

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case class Args(inputVcf: Option[File] = None, outputVariants: Option[File] = None, outputConsensus: Option[File] = None, outputConsensusVariants: Option[File] = None, bamFile: Option[File] = None, snpsOnly: Boolean = false, sampleName: Option[String] = None, outputName: Option[String] = None, minAD: Int = 8, minDepth: Int = 8, reference: Option[File] = None) extends Product with Serializable

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Instance Constructors

  1. new Args(inputVcf: Option[File] = None, outputVariants: Option[File] = None, outputConsensus: Option[File] = None, outputConsensusVariants: Option[File] = None, bamFile: Option[File] = None, snpsOnly: Boolean = false, sampleName: Option[String] = None, outputName: Option[String] = None, minAD: Int = 8, minDepth: Int = 8, reference: Option[File] = None)

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Value Members

  1. final def !=(arg0: Any): Boolean

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  2. final def ##(): Int

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  3. final def ==(arg0: Any): Boolean

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  4. final def asInstanceOf[T0]: T0

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  5. val bamFile: Option[File]

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  6. def clone(): AnyRef

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  7. final def eq(arg0: AnyRef): Boolean

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  8. def finalize(): Unit

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  9. final def getClass(): Class[_]

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  10. val inputVcf: Option[File]

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  11. final def isInstanceOf[T0]: Boolean

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  12. val minAD: Int

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  13. val minDepth: Int

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  14. final def ne(arg0: AnyRef): Boolean

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  15. final def notify(): Unit

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  16. final def notifyAll(): Unit

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  17. val outputConsensus: Option[File]

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  18. val outputConsensusVariants: Option[File]

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  19. val outputName: Option[String]

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  20. val outputVariants: Option[File]

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  21. val reference: Option[File]

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  22. val sampleName: Option[String]

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  23. val snpsOnly: Boolean

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  24. final def synchronized[T0](arg0: ⇒ T0): T0

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  25. final def wait(): Unit

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  26. final def wait(arg0: Long, arg1: Int): Unit

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  27. final def wait(arg0: Long): Unit

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