Class/Object

nl.biopet.tools.bamstats.schema

BamstatsRoot

Related Docs: object BamstatsRoot | package schema

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case class BamstatsRoot(samples: Map[String, Sample]) extends Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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Inherited
  1. BamstatsRoot
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. AnyRef
  7. Any
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Visibility
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Instance Constructors

  1. new BamstatsRoot(samples: Map[String, Sample])

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def +(other: BamstatsRoot): BamstatsRoot

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  4. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  5. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  6. def asStatsList: List[Stats]

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    Convert this object to a list of stats grouped by readgroup.

  7. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def combinedStats: GroupStats

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    Returns the combined groupStats for the whole bamstats root.

    Returns the combined groupStats for the whole bamstats root.

    returns

    groupstats

  9. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  10. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  12. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  13. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  14. final def notify(): Unit

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    Definition Classes
    AnyRef

  15. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  16. def readgroups: Map[GroupID, Readgroup]

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    Flattens the BamstatsRoot object into a map of GroupIDs and ReadgroupData

    Flattens the BamstatsRoot object into a map of GroupIDs and ReadgroupData

    returns

    a Map[GroupID, Readgroup]

  17. val samples: Map[String, Sample]

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  18. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  19. def toJson: JsValue

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    Converts this object to json

    Converts this object to json

    returns

    a JSvalue representing this object.

  20. def validate(): Unit

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    validate this object.

  21. final def wait(): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long): Unit

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    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  24. def writeFile(file: File): Unit

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    Write this object to a Json file

    Write this object to a Json file

    file

    the output file.

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

Ungrouped