Class

nl.biopet.tools.bamstats

Stats

Related Doc: package bamstats

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case class Stats(flagstat: FlagstatCollector = new FlagstatCollector(), mappingQualityHistogram: Histogram[Int] = new Histogram[Int](), insertSizeHistogram: Histogram[Int] = new Histogram[Int](), clippingHistogram: Histogram[Int] = new Histogram[Int](), leftClippingHistogram: Histogram[Int] = new Histogram[Int](), rightClippingHistogram: Histogram[Int] = new Histogram[Int](), _5_ClippingHistogram: Histogram[Int] = new Histogram[Int](), _3_ClippingHistogram: Histogram[Int] = new Histogram[Int]()) extends Product with Serializable

Created by pjvanthof on 05/07/16.

Linear Supertypes
Serializable, Serializable, Product, Equals, AnyRef, Any
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  1. Stats
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Instance Constructors

  1. new Stats(flagstat: FlagstatCollector = new FlagstatCollector(), mappingQualityHistogram: Histogram[Int] = new Histogram[Int](), insertSizeHistogram: Histogram[Int] = new Histogram[Int](), clippingHistogram: Histogram[Int] = new Histogram[Int](), leftClippingHistogram: Histogram[Int] = new Histogram[Int](), rightClippingHistogram: Histogram[Int] = new Histogram[Int](), _5_ClippingHistogram: Histogram[Int] = new Histogram[Int](), _3_ClippingHistogram: Histogram[Int] = new Histogram[Int]())

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Value Members

  1. final def !=(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  2. final def ##(): Int

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    Definition Classes
    AnyRef → Any

  3. def +=(other: Stats): Stats

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    This will add an other Stats inside this

  4. final def ==(arg0: Any): Boolean

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    Definition Classes
    AnyRef → Any

  5. val _3_ClippingHistogram: Histogram[Int]

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  6. val _5_ClippingHistogram: Histogram[Int]

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  7. final def asInstanceOf[T0]: T0

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    Definition Classes
    Any

  8. val clippingHistogram: Histogram[Int]

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  9. def clone(): AnyRef

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  10. final def eq(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  11. def finalize(): Unit

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    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. val flagstat: FlagstatCollector

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  13. final def getClass(): Class[_]

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    Definition Classes
    AnyRef → Any

  14. val insertSizeHistogram: Histogram[Int]

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  15. final def isInstanceOf[T0]: Boolean

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    Definition Classes
    Any

  16. val leftClippingHistogram: Histogram[Int]

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  17. val mappingQualityHistogram: Histogram[Int]

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  18. final def ne(arg0: AnyRef): Boolean

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    Definition Classes
    AnyRef

  19. final def notify(): Unit

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    Definition Classes
    AnyRef

  20. final def notifyAll(): Unit

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    Definition Classes
    AnyRef

  21. val rightClippingHistogram: Histogram[Int]

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  22. final def synchronized[T0](arg0: ⇒ T0): T0

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    Definition Classes
    AnyRef

  23. def toSummaryMap: Map[String, Map[String, Any]]

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  24. final def wait(): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

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    Definition Classes
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    @throws( ... )

  26. final def wait(arg0: Long): Unit

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    Definition Classes
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    Annotations
    @throws( ... )

  27. def writeStatsToFiles(outputDir: File): Unit

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Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from AnyRef

Inherited from Any

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